LISA: Clustering of Local Indicators of Spatial Assocation
Analysis
Upload Spatial (Segmented Cells) data. Choose csv file
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Upload Phenotype data. Choose csv file
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Example
Segmented Cell Column
Select imageID (Required)
Select X & Y coordinates (Required)
Select cellType (Required)
Assign Segmented Cell columns
Finished assigning segmented cell columns?
Phenotype Column (Optional - Hypothesis Testing)
Select imageID (Required)
Select Condition (Required)
Select Subject (Optional)
Select Covariates (Optional)
Assign Pheonotype columns
Finished assigning phenotype columns?
Choose attribute to display
Segmented Cell Data
Phenotype Data
Example
Number of LISA region clusters to generate:
Plot Heatmap or Bubble Chart?
Bubble
Heatmap
Plot distribution for imageID:
Annotate image with hatch effect?
Run LISA?
Download Annotated Data
Data Summary
Lisa Curve